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Publications

The research projects of the modeling network were officially launched in May 2022. An overview of all publications produced to date with the participation of MONID and its networks is listed here.

The complete list of contributions can also be found on the respective project pages.

Publications by OptimAgent and its sub-projects

  1. Engels, G., Oechsle, AL., Schlegtendal, A. et al: SARS-CoV-2 sero-immunity and quality of life in children and adolescents in relation to infections and vaccinations: the IMMUNEBRIDGE KIDS cross-sectional study, 2022. Infection 51, 1531-1539 (2023).
  2. Johannes Ponge, Dennis Horstkemper, Bernd Hellingrath, Lukas Bayer, Wolfgang Bock, André Karch: Evaluating Parallelization Strategies for Large-Scale Individual-based Infectious Disease Simulations. WSC 2023: 1088-1099. Link
  3. Wójta-Kempa, M.; Skawina, A.; Płatek, D.; Jarynowski, A.; Skawina, I.; Belik, V. (2023): Social values are significant factors in control of COVID-19 the first phase pandemic. E-methodology; 9(9), pp. 33-39. link
  4. Jarynowski, A., Czekaj, Ł., Semenov, A., Belik, V. (2023): Multiplex network approach for modeling the spread of African swine fever in Poland. LNCS Lecture Notes in Computer Science (LNCS, volume 14479) ISBN 978-981-97-0668-6
  5. Jarynowski, A.; Jędrzejczyk, K.; Maksymowicz, S. (2023): Grain and food security as a tool of biopolitics: real-time internet monitoring and crisis management. E-methodology 9(9), pp. 96-112. link
  6. Schulz S, Pastor R, Koyuncuoglu C, et al. Real-time Dissection and Forecast of Infection Dynamics during a Pandemic. medRxiv; 2023. DOI: 10.1101/2023.03.02.23286502. Link Preprint
  7. Lange B, Jaeger VK, Harries M, Rücker V, Streeck H, Blaschke S, Petersmann A, Toepfner N, Nauck M, Hassenstein MJ, Dreier M, von Holt I, Budde A, Bartz A, Ortmann J, Kurosinski MA, Berner R, Borsche M, Brandhorst G, Brinkmann M, Budde K, Deckena M, Engels G, Fenzlaff M, Härtel C, Hovardovska O, Katalinic A, Kehl K, Kohls M, Krüger S, Lieb W, Meyer-Schlinkmann KM, Pischon T, Rosenkranz D, Rübsamen N, Rupp J, Schäfer C, Schattschneider M, Schlegtendal A, Schlinkert S, Schmidbauer L, Schulze-Wundling K, Störk S, Tiemann C, Völzke H, Winter T, Klein C, Liese J, Brinkmann F, Ottensmeyer PF, Reese JP, Heuschmann P, Karch A.: Estimates of protection levels against SARS-CoV-2 infection and severe COVID-19 in Germany before the 2022/2023 winter season: the IMMUNEBRIDGE project. Infection. 2024 Feb;52(1):139-153. doi: 10.1007/s15010-023-02071-2. Epub 2023 Aug 2. PMID: 37530919; PMCID: PMC10811028. Link
  8. Harries M, Jaeger VK, Rodiah I, Hassenstein MJ, Ortmann J, Dreier M, von Holt I, Brinkmann M, Dulovic A, Gornyk D, Hovardovska O, Kuczewski C, Kurosinski MA, Schlotz M, Schneiderhan-Marra N, Strengert M, Krause G, Sester M, Klein F, Petersmann A, Karch A, Lange B.: Bridging the gap – estimation of 2022/2023 SARS-CoV-2 healthcare burden in Germany based on multidimensional data from a rapid epidemic panel. Int J Infect Dis. 2024 Feb;139:50-58. doi: 10.1016/j.ijid.2023.11.014. Epub 2023 Nov 24. PMID: 38008353. Link
  9. Sarajan MH, Mahreen K, Vanella P, Kuhlmann A. Impact of Demographic Developments and PCV13 Vaccination on the Future Burden of Pneumococcal Diseases in Germany-An Integrated Probabilistic Differential Equation Approach. Mathematics. 2024; 12(6):796. https://doi.org/10.3390/math12060796 Link

Publications by RESPINOW and its sub-projects

  1. Lange, B., Jäger, V., Rücker, V., Hassenstein, M., Harries, M., Berner, R., … Karch, A. Interim analysis of the IMMUNBRIDGE project for the communication of preliminary results to the modeling consortia of the BMBF-funded modeling platform. Zenodo. 08.08.2022. Link
  2. Lange, B., Jäger, V., Rücker, V., Hassenstein, M., Harries, M., Berner, R., … Karch, A. 2. Interim analysis of the IMMUNBRIDGE project to communicate preliminary results to the modeling network for severe infectious diseases. Zenodo. 12.10.2022. Link
  3. Dan, S., Chen, Yu., Chen Yi., Monod, M., Jäger, V., Bhatt, S., Karch, A., Ratmann, O. Estimating fine age structure and time trends in human contact patterns from coarse contact data: the Bayesian rate consistency model. Arxiv. 20.10.2022. Link
  4. Harries, M., Jaeger, V. K., Rodiah, I., Hassenstein, M. J., Ortmann, J., Dreier, M., von Holt, I., Brinkmann, M., Dulovic, A., Gornyk, D., Hovardovska, O., Kuczewski, C., Kurosinski, M.-A., Schlotz, M., Schneiderhan-Marra, N., Strengert, M., Krause, G., Sester, M., Klein, F., . . Lange, B. (2024). Bridging the gap – estimation of 2022/2023 SARS-CoV-2 healthcare burden in Germany based on multidimensional data from a rapid epidemic panel. International Journal of Infectious Diseases, 139, 50-58. link
  5. Contreras, S., Oróstica, K.Y., Daza-Sanches, A., Wagner J., Dönges, P., Medina-Ortiz, D., Jara, M., Verdugo, R., Conca, C., Priesemann, V., Olivera-Nappa, A. Model-based assessment of sampling protocols for infectious disease genomic surveillance. Elsevier. 03.01.2023. Link
  6. Dehning, J., Mohr, S.B., Contreras S., Dönges, P., Iftekhar, E.N., Schulz, O., Bechtle, P., Priesemann, V. Impact of the Euro 2020 championship on the spread of COVID-19. Nature Communications. 18.01.2023. Link
  7. Walde, J., Chaturvedi, M., Berger, T., Bartz, A., Killewald, R., Tomori, D.V., Rübsamen, N., Lange, B., Scholz, S., Treskova, M., Bucksch, K., Jarvis, C.I., Mikolajczyk, R., Karch, A. & Jäger, V.. Effect of risk status for severe COVID-19 on individual contact behavior during the SARS-CoV-2 pandemic in 2020/2021-an analysis based on the German COVIMOD study. 06.04.2023. Link
  8. Schulze-Wundling, K., Ottensmeyer, P., Meyer-Schlinkmann, K., Deckena, M., Krüger, S., Schlinkert, S., Budde, A., Münstermann, D., Töpfner, N., Petersmann, A., Nauck, M., Karch, A., Lange, B., Blaschke, S., Tiemann, C., Streeck, H.. Basic immunity against SARS-CoV-2 in the German population. 06.04.2023. Link
  9. Wolffram, D., Abbott, S., An der Heiden, M., Funk, S., Günther, F., Hailer, D., Heyder, S., Hotz, T., Van de Kassteele, J., Küchenhoff, H., Müller-Hansen, S., Syliqi, D., Ullrich, A., Weigert, M., Schienle, M., Bracher, J.. Collaborative nowcasting of COVID-19 hospitalization incidences in Germany. 18.04.2023. Link
  10. Marsall, P., Fandrich, M., Griesbaum, J., Harries, M., Lange, B., Ascough, S., Dayananda, P., Chiu, C., Remppis, J., Ganzenmueller, T., Renk, H., Stengert, M., Schneiderhan-Marra, N., Dulovic, A., RESPINOW study consortium (2023). Development and validation of a respiratory syncytial virus multiplex immunoassay. bioRxiv, 2023.2008.2030.555534. Link

All MODUS-Covid reports

  1. MODUS-COVID report of 13.11.2023
    Analysis of the temporal distance between COVID-19 waves and scenarios for winter 2023/2024
    Nagel, Kai; Bostanci, Inan; Maier, Kristina; Müller, Sebastian Alexander; Paltra, Sydney; Rakow, Christian; Rehmann, Jakob; Conrad, Tim; Schütte, Christof. Link
  2. MODUS-COVID report from 22.02.2024
    Bostanci, Inan; Maier, Kristina; Paltra, Sydney; Rakow, Christian; Rehmann, Jakob; Schütte, Christof; Nagel, Kai; Conrad, Tim. Link

Publications by LOKI and its sub-projects

  1. M. J. Kühn, D. Abele, T. Mitra, W. Koslow, M. Abedi, K. Rack, M. Siggel, S. Khailaie, M. Klitz, S. Binder, Luca Spataro, J. Gilg, J. Kleinert, M. Häberle, L. Plötzke, C. D. Spinner, M. Stecher, X. X. Zhu, A. Basermann, M. Meyer-Hermann. Assessment of effective mitigation and prediction of the spread of SARS-CoV-2 in Germany using demographic information and spatial resolution. Mathematical Biosciences 339, 108648 (2021). Link
  2. M. J. Kühn, D. Abele, S. Binder, K. Rack, M. Klitz, J. Kleinert, J. Gilg, L. Spataro, W. Koslow, M. Siggel, M. Meyer-Hermann, A. Basermann. Regional opening strategies with commuter testing and containment of new SARS-CoV-2 variants (2022). BMC Infectious Diseases 22:333. Link
  3. W. Koslow, M. J. Kühn, S. Binder, M. Klitz, D. Abele, A. Basermann, M. Meyer-Hermann, Appropriate relaxation of non-pharmaceutical interventions minimizes the risk of a resurgence in SARS-CoV-2 infections in spite of the Delta variant (2022). PLoS Comput Biol 18(5): e1010054. Link
  4. P. Kaur Betz, J. Stoll , V. Grappendorf, J. Gilg, M. Zeumer , M. Klitz, L. Spataro, A. Klein, L. Rothenhäusler, H. Bohnacker, H. Krämer M. Meyer-Hermann, S. Somogyi, A. Gerndt and M. J. Kühn “ESID: Exploring the Design and Development of a Visual Analytics Tool for Epidemiological Emergencies.”, IEEE VIS Workshop on Visualization for Pandemic and Emergency Responses (2023). Preprint

Publications of PANDEMOS and its subprojects

  1. Martin J. Kühn, Daniel Abele, Tanmay Mitra, Wadim Koslow, Majid Abedi, Kathrin Rack, Martin Siggel, Sahamoddin Khailaie, Margrit Klitz, Sebastian Binder, Luca Spataro, Jonas Gilg, Jan Kleinert, Matthias Häberle, Lena Plötzke, Christoph D. Spinner, Melanie Stecher, Xiao Xiang Zhu, Achim Basermann, Michael Meyer-Hermann, Assessment of effective mitigation and prediction of the spread of SARS-CoV-2 in Germany using demographic information and spatial resolution, Mathematical Biosciences, Volume 339, 2021, 108648, ISSN 0025-5564, https://doi.org/10.1016/j.mbs.2021.108648. Link
  2. W. Koslow, M. J. Kühn, S. Binder, M. Klitz, D. Abele, A. Basermann, M. Meyer-Hermann, Appropriate relaxation of non-pharmaceutical interventions minimizes the risk of a resurgence in SARS-CoV-2 infections in spite of the Delta variant (2022). PLoS Comput Biol 18(5): e1010054. Link Preprint
  3. M. J. Kühn, D. Abele, S. Binder, K. Rack, M. Klitz, J. Kleinert, J. Gilg, L. Spataro, W. Koslow, M. Siggel, M. Meyer-Hermann, A. Basermann. Regional opening strategies with commuter testing and containment of new SARS-CoV-2 variants (2022). BMC Infectious Diseases 22:333. link preprint
  4. M. Zeumer, J. Gilg, P. K. Betz, A. Gerndt, VVAFER-Versatile visual analytics framework for exploration and research. Electronic Imaging 35 (2023): 1-9. Link
  5. S. Yosmaoglu, D. Diallo, T. Hecking, A. Schengen Refining agent-based travel demand models using social media data, Transport Research Arena, Lisbon, 2022 (2023) Link
  6. P. Kaur Betz, J. Stoll , V. Grappendorf, J. Gilg, M. Zeumer , M. Klitz, L. Spataro, A. Klein, L. Rothenhäusler, H. Bohnacker, H. Krämer M. Meyer-Hermann, S. Somogyi, A. Gerndt and M. J. Kühn ESID: Exploring the Design and Development of a Visual Analytics Tool for Epidemiological Emergencies. IEEE VIS Workshop on Visualization for Pandemic and Emergency Responses (Vis4PandEmRes) (2023). Link Preprint
  7. J. L. Malkus, M. L. Díaz, A. Schengen, T. Mocanu, and M. J. Kühn An OpenStreetMap-based approach for generating capacity-restricted POIs for activity-based travel demand modeling. (2024).
  8. H. Zunker, R. Schmieding, D. Kerkmann, A. Schengen, S. Diexer, R. Mikolajczyk, M. Meyer-Hermann, and M. J. Kühn Novel travel time aware metapopulation models: A combination with multi-layer waning immunity to assess late-phase epidemic and endemic scenarios (2024). Preprint
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